BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB008C11SP1|AL425841
(800 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1648 1516 0.0
3x_Contig78 236 6e-62
>3x_Contig1648
Length = 16375
Score = 1516 bits (765), Expect = 0.0
Identities = 794/801 (99%), Gaps = 2/801 (0%)
Strand = Plus / Minus
Query: 1 gatcttcgatggaaacaattgggtacttcttgaccaattcgtggtacaagtcagccaatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 988 gatcttcgatggaaacaattgggtacttcttgaccaattcgtggtacaagtcagccaatt 929
Query: 61 gtggaccagacaaccacttggatgggtcggattctgggttcttgaagtccaagtcgtact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 928 gtggaccagacaaccacttggatgggtcggattctgggttcttgaagtccaagtcgtact 869
Query: 121 taccgtcctatgtagaattcagaagaagcacagtccaaaccgatatcgatcttaccttcg 180
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 taccgtcct-tgtagaattcagaagaagcacagtccaaaccgatatcgatcttaccttcg 810
Query: 181 taaccagcagccttgatagcatcgacaatcaagtccaaagcttcttcagcagtttgaatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 taaccagcagccttgatagcatcgacaatcaagtccaaagcttcttcagcagtttgaatg 750
Query: 241 tttggagcaacaccaccttcgtcaccgacgttaccggcagaagcaccgtatctcttcttg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 tttggagcaacaccaccttcgtcaccgacgttaccggcagaagcaccgtatctcttcttg 690
Query: 301 gtcaaagacttcaagttgtggtaaacttcggaacccattctcaaggcttcagcgaaggtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 gtcaaagacttcaagttgtggtaaacttcggaacccattctcaaggcttcagcgaaggtt 630
Query: 361 tcagcaccagttggagcaatcataaattcttgcaaagccaaagcaccaccagcgtgggaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 tcagcaccagttggagcaatcataaattcttgcaaagccaaagcaccaccagcgtgggaa 570
Query: 421 ccaccgttcaagacgttcaagaatggaactggcaagacgaatggttgggtcttagcaccg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 ccaccgttcaagacgttcaagaatggaactggcaagacgaatggttgggtcttagcaccg 510
Query: 481 gccaagtcagccaaatgttggtacaatgggacgttcttggcagcagcaccggccttggaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 gccaagtcagccaaatgttggtacaatgggacgttcttggcagcagcaccggccttggaa 450
Query: 541 gcagccaaggaaacacccaagatagcgtta-cacccaacttggacttgttagcagtaccg 599
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 449 gcagccaaggaaacacccaagatagcgttagcacccaacttggacttgttagcagtaccg 390
Query: 600 tctagagacaacaacaagtcatcgacttgttgtaggttggtaacgtcaacgttagcctta 659
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 389 tctagagacaacaacaagtcatcgacttgttgttggttggtaacgtcaacgttagcctta 330
Query: 660 accaaagctggagcaatgatgttgttaacgttagaaacagcagtcaaaacacccttacct 719
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 329 accaaagctggagcaatgatgttgttaacgttagaaacagcagtcaaaacacccttactt 270
Query: 720 aaccatttagatttgtcaccatctctcaattctagagcttcgtgaacaccagtggaggca 779
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 acccatttagatttgtcaccatctctcaattctagagcttcgtgaacaccagtggaggca 210
Query: 780 ccagatggaacaatggatctg 800
||| | |||||||||||||||
Sbjct: 209 ccacacggaacaatggatctg 189
>3x_Contig78
Length = 876
Score = 236 bits (119), Expect = 6e-62
Identities = 119/119 (100%)
Strand = Plus / Minus
Query: 1 gatcttcgatggaaacaattgggtacttcttgaccaattcgtggtacaagtcagccaatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 gatcttcgatggaaacaattgggtacttcttgaccaattcgtggtacaagtcagccaatt 60
Query: 61 gtggaccagacaaccacttggatgggtcggattctgggttcttgaagtccaagtcgtac 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59 gtggaccagacaaccacttggatgggtcggattctgggttcttgaagtccaagtcgtac 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5481
Number of Sequences: 1807
Number of extensions: 5481
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 2
length of query: 800
length of database: 10,358,551
effective HSP length: 16
effective length of query: 784
effective length of database: 10,329,639
effective search space: 8098436976
effective search space used: 8098436976
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)